Cronin, M.T.D.; Netzeva, T.I.; Dearden, J.C.; Edwards, R.; Worgan, A.D.P. Assessment and Modeling of the Toxicity of Organic Chemicals to Chlorella vulgaris :  Development of a Novel Database. Chem. Res. Toxicol. 2004, 17, 545–554.

QsarDB Repository

Cronin, M.T.D.; Netzeva, T.I.; Dearden, J.C.; Edwards, R.; Worgan, A.D.P. Assessment and Modeling of the Toxicity of Organic Chemicals to Chlorella vulgaris :  Development of a Novel Database. Chem. Res. Toxicol. 2004, 17, 545–554.

QDB archive DOI: 10.15152/QDB.162   DOWNLOAD

QsarDB content

Property pEC50: 15-minute algal toxicity as log(1/EC50) [log(1/mM)] i

Eq5: MLR with logKow - non-polar narcosis i

Regression model (regression)

Open in:QDB ExplorerQDB Predictor

NameTypen

R2

σ

Training settraining910.7560.724
Eq6: MLR with logKow and LUMO i

Regression model (regression)

Open in:QDB ExplorerQDB Predictor

NameTypen

R2

σ

Training settraining910.8680.532
Eq7: MLR with logKow, LUMO and ∆1χv i

Regression model (regression)

Open in:QDB ExplorerQDB Predictor

NameTypen

R2

σ

Training settraining910.8900.485
Eq8: MLR with logKow, LUMO and ∆1χv i

Regression model (regression)

Open in:QDB ExplorerQDB Predictor

NameTypen

R2

σ

Training settraining730.8920.485
Validation setexternal validation180.8610.559
Fig5: Non-linear kNN model, k = 7 i

k-Nearest neighbors (regression)

Open in:QDB ExplorerQDB Predictor

NameTypen

R2

σ

Training settraining910.8560.576
Fig7: Non-linear kNN consensus model, k = 5, 6, 7 i

k-Nearest neighbors ensemble (regression)

Open in:QDB ExplorerQDB Predictor

NameTypen

R2

σ

Training settraining730.8340.625
Validation setexternal validation180.9300.408

Citing

When using this QDB archive, please cite (see details) it together with the original article:

  • Ahte, P. Data for: Assessment and Modeling of the Toxicity of Organic Chemicals to Chlorella vulgaris :  Development of a Novel Database. QsarDB repository, QDB.162. 2015. http://dx.doi.org/10.15152/QDB.162

  • Cronin, M. T. D.; Netzeva, T. I.; Dearden, J. C.; Edwards, R.; Worgan, A. D. P. Assessment and Modeling of the Toxicity of Organic Chemicals to Chlorella vulgaris :  Development of a Novel Database. Chem. Res. Toxicol. 2004, 17, 545–554. http://dx.doi.org/10.1021/tx0342518

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dc.date.accessioned2015-05-28T20:38:28Z
dc.date.available2015-05-28T20:38:28Z
dc.date.issued2015-05-28
dc.identifier.urihttp://hdl.handle.net/10967/162
dc.identifier.urihttp://dx.doi.org/10.15152/QDB.162
dc.description.abstractThis study reports a database of toxicity values for 91 compounds assessed in a novel, rapid, and economical 15 min algal toxicity test. The toxicity data were measured using the unicellular green alga Chlorella vulgaris in an assay that determined the disappearance of fluorescein diacetate. The chemicals tested covered a wide range of physicochemical properties and mechanisms of action. Quantitative activity-activity relationships with the toxicity of the chemicals to other species (Tetrahymena pyriformis, Vibrio fischeri, and Pimephales promelas) showed strong relationships, although some differences resulting from different protocols were established. Quantitative structure-activity relationships (QSARs) were determined using linear [multiple linear regression (MLR)] and nonlinear [k-nearest neighbors (KNN)] methods. Three descriptors, accounting for hydrophobicity, electrophilicity, and a function of molecular size corrected for the presence of heteroatoms, were found to be important to model toxicity. The predictivity of MLR was compared to KNN using leave-one-out cross-validation and the simulation of an external test set. MLR demonstrated greater stability in validation. The results of this study showed that method selection in QSAR is task-dependent and it is inappropriate to resort to more complicated but less transparent methods, unless there are clear indications (e.g., inability of MLR to deal with the data set) for the need of such methods.
dc.publisherPriit Ahte
dc.rightsAttribution 4.0 International
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/
dc.titleCronin, M.T.D.; Netzeva, T.I.; Dearden, J.C.; Edwards, R.; Worgan, A.D.P. Assessment and Modeling of the Toxicity of Organic Chemicals to Chlorella vulgaris :  Development of a Novel Database. Chem. Res. Toxicol. 2004, 17, 545–554.
qdb.property.endpoint3. Ecotoxic effects 3.2. Short-term toxicity to algaeen_US
qdb.property.speciesChlorella vulgaris (Green alga)en_US
qdb.descriptor.applicationClogP 1.0.0en_US
qdb.descriptor.applicationMOPAC 93en_US
qdb.descriptor.applicationQSARis 1.1en_US
qdb.prediction.applicationMinitab 13.1en_US
qdb.prediction.applicationExcel 2000en_US
bibtex.entryarticleen_US
bibtex.entry.authorCronin, M. T. D.
bibtex.entry.authorNetzeva, T. I.
bibtex.entry.authorDearden, J. C.
bibtex.entry.authorEdwards, R.
bibtex.entry.authorWorgan, A. D. P.
bibtex.entry.doi10.1021/tx0342518en_US
bibtex.entry.journalChem. Res. Toxicol.en_US
bibtex.entry.monthApr
bibtex.entry.number4en_US
bibtex.entry.pages545–554en_US
bibtex.entry.titleAssessment and Modeling of the Toxicity of Organic Chemicals to Chlorella vulgaris :  Development of a Novel Databaseen_US
bibtex.entry.volume17en_US
bibtex.entry.year2004
qdb.model.typeRegression model (regression)en_US
qdb.model.typek-Nearest neighbors (regression)en_US
qdb.model.typek-Nearest neighbors ensemble (regression)en_US


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